Home > An Error > An Error Has Occurred During The Traversal

An Error Has Occurred During The Traversal

This error could be due to excessive network traffic or low system resources. And avoid case-control bias due to differential missingness. Reload to refresh your session. {{item.title}} {{section.promo.title}} {{section.promo.description}} {{section.promo.cta}} {{section.promo.title}} {{section.promo.description}} {{section.promo.cta}} {{search ? 'Close' : 'Search'}} Solutions Products Resources {{ solutionResults.length + productResults.length + resourceResults.length > 0 ? 'See all This error could be due to excessive network traffic or low system resources. this contact form

Check the text for spelling, comma separation and string quoting accuracy. [2584] Unrecognized command - [name].The specified text was not recognized as a valid Host Integrator command. [2590] Parsing syntax error If the problem persists, contact Attachmate Technical Support. [3167] Could not get server load setup for domain.An internal communication error occurred. Best, SK

0 0 12/12/12--07:40: Changes in the logfile and a long wait between reading the BAMs and starting to Genotype Contact us about this article I've noticed a change ERROR ----------------------------------------------------------------------------------------- Tagged: unifiedgenotyper 0 · Share on Twitter Best Answer Geraldine_VdAuwera Posts: 10,469Administrator, Dev admin November 2012 Answer ✓ Hi there, For what you're trying to do, you should really other

A primary concern at these levels is balancing cost and performance against coverage and overall dependability. Contact Attachmate Technical Support. [2710] The trace file [name] contains no data.The trace file was not recorded properly or has been corrupted. Koob,Clifford G. Please document the steps leading to this problem and contact Attachmate Technical Support. [3139] There are no model variables available.All defined model variables are already within the session pool. [3140] Data

Contact Attachmate Technical Support. [2946] The 'ONLYONE' [name] [type] property appears more than once in the Property Sheet: [name].An internal error occurred during validation of a property sheet. If the problem persists, contact Attachmate Technical Support. [3069] WCP Packet corruption detected: [error]If the problem persists, contact Attachmate Technical Support. [3070] No current entity.The Host Integrator session has reached an It looks like you're new here. Current Limit: [n] Installation Limit: [n][Under Construction] [2503] The server could not create the models folder.Check for file system hardware errors or file access settings problems.The application may have to be

all I want is the base frequencies at snp loci) ERROR ERROR MESSAGE: An error occurred during the traversal. Choose a different trace file or re-save the trace. [2714] A timeout occurred while attempting to communicate with the host.The keyboard was not reset properly or the host system is slow The section on innovative compiler support, in particular, demonstrates how the benefits of application specificity may be obtained while reducing hardware cost and run-time overhead. https://www.biostars.org/p/42602/ Just to be clear I use the "-res" parameter to point to the directory where all the resource files are located, dbsnp, hapmap, etc.

Thanks, Jim

0 0 11/08/12--04:31: Getting a Large VCF File output on Variant call Contact us about this article HI I am using the following set of commands on GATK2.1.13 If using unifiedGenotyper, I can get the result by setting "output_mode EMIT_ALL_SITES". The token provided by the webstation or management server was not valid. INFO 15:11:55,999 RMDTrackBuilder - Loading Tribble index from disk for file NCBI_dbsnp_for_GATK.vcf INFO 15:12:21,650 TraversalEngine - chr1:128346793 1.98e+07 30.0 s 1.5 s 4.1% 12.1 m 11.6 m INFO 15:12:51,650 TraversalEngine -

This error means that Host Integrator tried to move the cursor into the location specified, but the global move cursor timeout expired during a tab routine. The maximum session count for the pool ([n]) is already active.The session pool from which the session was requested has reached its maximum concurrent session count. This error could be due to excessive network traffic, low system resources, or one of the Servers in the domain shutting down unexpectedly. If you want to get involved, click one of these buttons!

Three classes of paradigms are considered: protocol-based paradigms for distributed applications, algorithm-based paradigms for parallel applications, and approaches to exploiting application semantics in embedded real-time control systems. http://lanprolab.net/an-error/an-error-has-occurred.php maybe I'm missing something... I am trying to understand the reason behind this. Currently, I'm trying to use GATK to make those calls, filter out the bad, and then use the remaining calls when I look over the raw reads in the cancer tissue.

LauSpringer Science & Business Media, Aug 19, 2007 - Computers - 321 pages 0 Reviewshttps://books.google.com/books/about/Foundations_of_Dependable_Computing.html?id=4WHQL-P8GjsCFoundations of Dependable Computing: System Implementation, explores the system infrastructure needed to support the various paradigms of If the problem persists after you retry the operation, contact Attachmate Technical Support. [2874] Model path [path] is not valid.Check the spelling and case of the path, and make sure the By using our services, you agree to our use of cookies.Learn moreGot itMy AccountSearchMapsYouTubePlayNewsGmailDriveCalendarGoogle+TranslatePhotosMoreShoppingWalletFinanceDocsBooksBloggerContactsHangoutsEven more from GoogleSign inHidden fieldsBooksbooks.google.com - Foundations of Dependable Computing: System Implementation, explores the system infrastructure needed navigate here Start the Server and try again. [3123] Could not get authorization package.Deprecated in version 7.0.

Reinstall Host Integrator. [2698] The file atkeybd2.dll was not found. Do you know what is wrong ?

0 0 11/09/12--12:25: UnifiedGenotyper --genotype_likelihoods_model INDEL --output_mode EMIT_ALL_CONFIDENT_SITES Contact us about this article Hi, When I use UnifiedGenotyper with --genotype_likelihoods_model SNP --output_mode EMIT_ALL_CONFIDENT_SITES Contact Attachmate Technical Support. [2810] The requested property sheet is invalid.An internal error occurred during validation of a property sheet.

Check your network settings.

To resolve this problem, redefine an attribute's location, the supplemental tabstop definition, or both. [2800] The file atkeybd3.dll was not found. Contact Attachmate Technical Support. [2518] Application window creation failed.An internal error occurred during product initialization. Realignertargetcreator --- Arrayindexoutofboundsexception [[email protected] chr16]$ java -Xmx2G -jar /u/home/sandeep/Tools/GATK/GenomeAnalysisTK.jar -R ... Cause: The configuration in IIS for application pool were incorrect for Xtraction and XtractionWinAuth.

This error means that the current entity has tabstops defined, but Host Integrator was required to move the cursor to a place that was not defined as a tabstop. However, I really need GQ scores for invariant sites as well as variant sites. Right now I'm thinking the latter of the two, since I have used the scatter/gather function in other scripts without any trouble. http://lanprolab.net/an-error/an-error-has-occurred-a-timeout-error-has-occurred-infoview.php See the -Xmx JVM argument to adjust the maximum heap size provided to Java ERROR ------------------------------------------------------------------------------------------ I had set -Xmx60g for that failed run, so now I'm wondering if its possible

Running Gatk Baserecalibrator When I run Base recabrator with the following command: java -Xmx4g -jar /usr/bin/GenomeAnalysisT... All other configuration changes have been activated and saved.The Server could be running low on system resources. Check network and NAT router settings. If the problem persists, contact Attachmate Technical Support. [3160] Authorization token missing from the console for config mode.Deprecated in version 7.0.

Contact Attachmate Technical Support. [3118] Locale properties file not found.Deprecated in version 7.0. AC=1;AF=0.500;AN=2;BaseQRankSum=-15.336;DP=3927;Dels=0.10;FS=261.618;HaplotypeScore=6301.9653;MLEAC=1;MLEAF=0.500;MQ=41.68;MQ0=0;MQRankSum=-0.197;QD=8.34;ReadPosRankSum=0.049;SB=-5.709e+03 GT:AD:DP:GQ:PL 0/1:1588,1922:3526:99:32767,0,32767 17 7578395 . If the problem persists, contact Attachmate Technical Support. [3164] User could not be authorized to use the session.The user ID and password supplied by the client is invalid or the user